PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G231900.1
Common NameB456_005G231900, LOC105795179
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 268aa    MW: 29493.7 Da    PI: 4.5941
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G231900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.5e-101962361055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Gorai.005G231900.1 196 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 236
                         9******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-14187252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-12191245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.55E-12195240No hitNo description
PfamPF000107.3E-8196236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MDSMGTLLEG DWSCFSGMYT TDQEADFMAQ LLSNCPQLPD IDMSNYLSDS NPVFVTNNSP  60
ISMDFCMEDG TKTSFFLVEP DDCLDPEMGK NGNVEKEPKP EPEKKSSNKR SRNSGDVHVQ  120
KSKRNGRSKK NQTIAANDDE DGNGGLNGQS WASCSSEDDS NGGASSGSKG ETTLNLNGKT  180
RASRGAATDP QSLYARKRRE RINERLRILQ NLVPNGTKVD ISTMLEEAVQ YVKFLQLQIK  240
LLSSDDLWMY APIAYNGMDI GIDLKRT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5838427e-96JX583842.1 Gossypium hirsutum clone NBRI_GE16990 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012480143.10.0PREDICTED: transcription factor bHLH84
SwissprotQ7XHI91e-63BH084_ARATH; Transcription factor bHLH84
TrEMBLA0A0D2NHC20.0A0A0D2NHC2_G
STRINGPOPTR_0001s30150.14e-88(Populus trichocarpa)
STRINGPOPTR_0009s09210.11e-87(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28342663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.13e-51bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]